PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.350940.1
Common NameCsa_1G269350, LOC101211609
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 423aa    MW: 44173.3 Da    PI: 6.8369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.350940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12215260555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Cucsa.350940.1 215 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 260
                     99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17208270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-13208264No hitNo description
PROSITE profilePS5088817.39210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16212269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9215260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MQPCSREMQS LNSLLNHSQI SLQDLHADHH LNPPPPQIPP SHFHHFDPSA ASNDDFLEQM  60
LNTIPSCSWP DLNPSNPKSP WDLNPINKPS RDISDDPHQN HLTATSPAAK AAVMLQQQLL  120
LSRGMSGSAG NGVADHGLPP MPLSLGNADL DRSQNDVVDG SCFRPPNSGG SLQSNSFGAP  180
GNVMNQTPGG GSAGVSQSQP KQKVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA  240
NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL VADVSSEGGG ECMQGSGAQA  300
GGRNSNNNGN GGNQTASTND SMTVTEQQVA KLMEKDMGSA MQYLQGKGLC LMPISLATAI  360
STSTCHSRNP LMNGGGGGGG SQHPVMGSNG EGPSSPSMSV LTVQSTSMGN GSVKDAASVS  420
KP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146688.10.0PREDICTED: transcription factor bHLH82
SwissprotQ9ZUG91e-86BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0A0LWM20.0A0A0A0LWM2_CUCSA; Uncharacterized protein
STRINGVIT_11s0037g00040.t011e-160(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-64LJRHL1-like 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]